// Package arbo > vt.go implements the Virtual Tree, which computes a tree // without computing any hash. With the idea of once all the leafs are placed in // their positions, the hashes can be computed, avoiding computing a node hash // more than one time. package arbo import ( "bytes" "encoding/hex" "fmt" "io" "math" "runtime" "sync" ) type node struct { l *node r *node k []byte v []byte path []bool h []byte } type params struct { maxLevels int hashFunction HashFunction emptyHash []byte dbg *dbgStats } type kv struct { pos int // original position in the inputted array keyPath []byte k []byte v []byte } func (p *params) keysValuesToKvs(ks, vs [][]byte) ([]kv, error) { if len(ks) != len(vs) { return nil, fmt.Errorf("len(keys)!=len(values) (%d!=%d)", len(ks), len(vs)) } kvs := make([]kv, len(ks)) for i := 0; i < len(ks); i++ { keyPath := make([]byte, p.hashFunction.Len()) copy(keyPath[:], ks[i]) kvs[i].pos = i kvs[i].keyPath = keyPath kvs[i].k = ks[i] kvs[i].v = vs[i] } return kvs, nil } // vt stands for virtual tree. It's a tree that does not have any computed hash // while placing the leafs. Once all the leafs are placed, it computes all the // hashes. In this way, each node hash is only computed one time (at the end) // and the tree is computed in memory. type vt struct { root *node params *params } func newVT(maxLevels int, hash HashFunction) vt { return vt{ root: nil, params: ¶ms{ maxLevels: maxLevels, hashFunction: hash, emptyHash: make([]byte, hash.Len()), // empty }, } } // addBatch adds a batch of key-values to the VirtualTree. Returns an array // containing the indexes of the keys failed to add. Does not include the // computation of hashes of the nodes neither the storage of the key-values of // the tree into the db. After addBatch, vt.computeHashes should be called to // compute the hashes of all the nodes of the tree. func (t *vt) addBatch(ks, vs [][]byte) ([]int, error) { nCPU := flp2(runtime.NumCPU()) if nCPU == 1 || len(ks) < nCPU { var invalids []int for i := 0; i < len(ks); i++ { if err := t.add(0, ks[i], vs[i]); err != nil { invalids = append(invalids, i) } } return invalids, nil } l := int(math.Log2(float64(nCPU))) kvs, err := t.params.keysValuesToKvs(ks, vs) if err != nil { return nil, err } buckets := splitInBuckets(kvs, nCPU) nodesAtL, err := t.getNodesAtLevel(l) if err != nil { return nil, err } if len(nodesAtL) != nCPU && t.root != nil { /* Already populated Tree but Unbalanced - Need to fill M1 and M2, and then will be able to continue with the flow - Search for M1 & M2 in the inputed Keys - Add M1 & M2 to the Tree - From here can continue with the flow R / \ / \ / \ * * | \ | \ | \ L: M1 * M2 * (where M1 and M2 are empty) / | / / | / / | / A * * / \ | \ / \ | \ / \ | \ B * * C / \ |\ ... ... | \ | \ D E */ // add one key at each bucket, and then continue with the flow for i := 0; i < len(buckets); i++ { // add one leaf of the bucket, if there is an error when // adding the k-v, try to add the next one of the bucket // (until one is added) inserted := -1 for j := 0; j < len(buckets[i]); j++ { if err := t.add(0, buckets[i][j].k, buckets[i][j].v); err == nil { inserted = j break } } // remove the inserted element from buckets[i] if inserted != -1 { buckets[i] = append(buckets[i][:inserted], buckets[i][inserted+1:]...) } } nodesAtL, err = t.getNodesAtLevel(l) if err != nil { return nil, err } } if len(nodesAtL) != nCPU { return nil, fmt.Errorf("This error should not be reached."+ " len(nodesAtL) != nCPU, len(nodesAtL)=%d, nCPU=%d."+ " Please report it in a new issue:"+ " https://github.com/vocdoni/arbo/issues/new", len(nodesAtL), nCPU) } subRoots := make([]*node, nCPU) invalidsInBucket := make([][]int, nCPU) var wg sync.WaitGroup wg.Add(nCPU) for i := 0; i < nCPU; i++ { go func(cpu int) { bucketVT := newVT(t.params.maxLevels, t.params.hashFunction) bucketVT.root = nodesAtL[cpu] for j := 0; j < len(buckets[cpu]); j++ { if err := bucketVT.add(l, buckets[cpu][j].k, buckets[cpu][j].v); err != nil { invalidsInBucket[cpu] = append(invalidsInBucket[cpu], buckets[cpu][j].pos) } } subRoots[cpu] = bucketVT.root wg.Done() }(i) } wg.Wait() var invalids []int for i := 0; i < len(invalidsInBucket); i++ { invalids = append(invalids, invalidsInBucket[i]...) } newRootNode, err := upFromNodes(subRoots) if err != nil { return nil, err } t.root = newRootNode return invalids, nil } func (t *vt) getNodesAtLevel(l int) ([]*node, error) { if t.root == nil { var r []*node nChilds := int(math.Pow(2, float64(l))) //nolint:gomnd for i := 0; i < nChilds; i++ { r = append(r, nil) } return r, nil } return t.root.getNodesAtLevel(0, l) } func (n *node) getNodesAtLevel(currLvl, l int) ([]*node, error) { if n == nil { var r []*node nChilds := int(math.Pow(2, float64(l-currLvl))) //nolint:gomnd for i := 0; i < nChilds; i++ { r = append(r, nil) } return r, nil } typ := n.typ() if currLvl == l && typ != vtEmpty { return []*node{n}, nil } if currLvl >= l { return nil, fmt.Errorf("This error should not be reached."+ " currLvl >= l, currLvl=%d, l=%d."+ " Please report it in a new issue:"+ " https://github.com/vocdoni/arbo/issues/new", currLvl, l) } var nodes []*node nodesL, err := n.l.getNodesAtLevel(currLvl+1, l) if err != nil { return nil, err } nodes = append(nodes, nodesL...) nodesR, err := n.r.getNodesAtLevel(currLvl+1, l) if err != nil { return nil, err } nodes = append(nodes, nodesR...) return nodes, nil } // upFromNodes builds the tree from the bottom to up func upFromNodes(ns []*node) (*node, error) { if len(ns) == 1 { return ns[0], nil } var res []*node for i := 0; i < len(ns); i += 2 { if (ns[i].typ() == vtEmpty && ns[i+1].typ() == vtEmpty) || (ns[i].typ() == vtLeaf && ns[i+1].typ() == vtEmpty) { // when both sub nodes are empty, the parent is also empty // or // when 1st sub node is a leaf but the 2nd is empty, the // leaf is used as parent res = append(res, ns[i]) continue } if ns[i].typ() == vtEmpty && ns[i+1].typ() == vtLeaf { // when 2nd sub node is a leaf but the 1st is empty, the // leaf is used as 'parent' res = append(res, ns[i+1]) continue } n := &node{ l: ns[i], r: ns[i+1], } res = append(res, n) } return upFromNodes(res) } // add adds a key&value as a leaf in the VirtualTree func (t *vt) add(fromLvl int, k, v []byte) error { leaf := newLeafNode(t.params, k, v) if t.root == nil { t.root = leaf return nil } if err := t.root.add(t.params, fromLvl, leaf); err != nil { return err } return nil } // computeHashes should be called after all the vt.add is used, once all the // leafs are in the tree. Computes the hashes of the tree, parallelizing in the // available CPUs. func (t *vt) computeHashes() ([][2][]byte, error) { var err error nCPU := flp2(runtime.NumCPU()) l := int(math.Log2(float64(nCPU))) nodesAtL, err := t.getNodesAtLevel(l) if err != nil { return nil, err } subRoots := make([]*node, nCPU) bucketPairs := make([][][2][]byte, nCPU) dbgStatsPerBucket := make([]*dbgStats, nCPU) errs := make([]error, nCPU) var wg sync.WaitGroup wg.Add(nCPU) for i := 0; i < nCPU; i++ { go func(cpu int) { bucketVT := newVT(t.params.maxLevels, t.params.hashFunction) bucketVT.params.dbg = newDbgStats() bucketVT.root = nodesAtL[cpu] var err error bucketPairs[cpu], err = bucketVT.root.computeHashes(l-1, t.params.maxLevels, bucketVT.params, bucketPairs[cpu]) if err != nil { errs[cpu] = err } subRoots[cpu] = bucketVT.root dbgStatsPerBucket[cpu] = bucketVT.params.dbg wg.Done() }(i) } wg.Wait() for i := 0; i < len(errs); i++ { if errs[i] != nil { return nil, errs[i] } } for i := 0; i < len(dbgStatsPerBucket); i++ { t.params.dbg.add(dbgStatsPerBucket[i]) } var pairs [][2][]byte for i := 0; i < len(bucketPairs); i++ { pairs = append(pairs, bucketPairs[i]...) } nodesAtL, err = t.getNodesAtLevel(l) if err != nil { return nil, err } for i := 0; i < len(nodesAtL); i++ { nodesAtL = subRoots } pairs, err = t.root.computeHashes(0, l, t.params, pairs) if err != nil { return nil, err } return pairs, nil } func newLeafNode(p *params, k, v []byte) *node { keyPath := make([]byte, p.hashFunction.Len()) copy(keyPath[:], k) path := getPath(p.maxLevels, keyPath) n := &node{ k: k, v: v, path: path, } return n } type virtualNodeType int const ( vtEmpty = 0 // for convenience uses same value that PrefixValueEmpty vtLeaf = 1 // for convenience uses same value that PrefixValueLeaf vtMid = 2 // for convenience uses same value that PrefixValueIntermediate ) func (n *node) typ() virtualNodeType { if n == nil { return vtEmpty } if n.l == nil && n.r == nil && n.k != nil { return vtLeaf } if n.l != nil || n.r != nil { return vtMid } return vtEmpty } func (n *node) add(p *params, currLvl int, leaf *node) error { if currLvl > p.maxLevels-1 { return ErrMaxVirtualLevel } if n == nil { // n = leaf // TMP! return nil } t := n.typ() switch t { case vtMid: if leaf.path[currLvl] { //right if n.r == nil { // empty sub-node, add the leaf here n.r = leaf return nil } if err := n.r.add(p, currLvl+1, leaf); err != nil { return err } } else { if n.l == nil { // empty sub-node, add the leaf here n.l = leaf return nil } if err := n.l.add(p, currLvl+1, leaf); err != nil { return err } } case vtLeaf: if bytes.Equal(n.k, leaf.k) { return fmt.Errorf("%s. Existing node: %s, trying to add node: %s", ErrKeyAlreadyExists, hex.EncodeToString(n.k), hex.EncodeToString(leaf.k)) } oldLeaf := &node{ k: n.k, v: n.v, path: n.path, } // remove values from current node (converting it to mid node) n.k = nil n.v = nil n.h = nil n.path = nil if err := n.downUntilDivergence(p, currLvl, oldLeaf, leaf); err != nil { return err } case vtEmpty: return fmt.Errorf("virtual tree node.add() with empty node %v", n) default: return fmt.Errorf("virtual tree node.add() with unknown node type %v", n) } return nil } func (n *node) downUntilDivergence(p *params, currLvl int, oldLeaf, newLeaf *node) error { if currLvl > p.maxLevels-1 { return ErrMaxVirtualLevel } if oldLeaf.path[currLvl] != newLeaf.path[currLvl] { // reached divergence in next level if newLeaf.path[currLvl] { n.l = oldLeaf n.r = newLeaf } else { n.l = newLeaf n.r = oldLeaf } return nil } // no divergence yet, continue going down if newLeaf.path[currLvl] { // right n.r = &node{} if err := n.r.downUntilDivergence(p, currLvl+1, oldLeaf, newLeaf); err != nil { return err } } else { // left n.l = &node{} if err := n.l.downUntilDivergence(p, currLvl+1, oldLeaf, newLeaf); err != nil { return err } } return nil } func splitInBuckets(kvs []kv, nBuckets int) [][]kv { buckets := make([][]kv, nBuckets) // 1. classify the keyvalues into buckets for i := 0; i < len(kvs); i++ { pair := kvs[i] // bucketnum := keyToBucket(pair.k, nBuckets) bucketnum := keyToBucket(pair.keyPath, nBuckets) buckets[bucketnum] = append(buckets[bucketnum], pair) } return buckets } // TODO rename in a more 'real' name (calculate bucket from/for key) func keyToBucket(k []byte, nBuckets int) int { nLevels := int(math.Log2(float64(nBuckets))) b := make([]int, nBuckets) for i := 0; i < nBuckets; i++ { b[i] = i } r := b mid := len(r) / 2 //nolint:gomnd for i := 0; i < nLevels; i++ { if int(k[i/8]&(1<<(i%8))) != 0 { r = r[mid:] mid = len(r) / 2 //nolint:gomnd } else { r = r[:mid] mid = len(r) / 2 //nolint:gomnd } } return r[0] } // flp2 computes the floor power of 2, the highest power of 2 under the given // value. func flp2(n int) int { res := 0 for i := n; i >= 1; i-- { if (i & (i - 1)) == 0 { res = i break } } return res } // computeHashes computes the hashes under the node from which is called the // method. Returns an array of key-values to store in the db func (n *node) computeHashes(currLvl, maxLvl int, p *params, pairs [][2][]byte) ( [][2][]byte, error) { if n == nil || currLvl >= maxLvl { // no need to compute any hash return pairs, nil } if pairs == nil { pairs = [][2][]byte{} } var err error t := n.typ() switch t { case vtLeaf: p.dbg.incHash() leafKey, leafValue, err := newLeafValue(p.hashFunction, n.k, n.v) if err != nil { return pairs, err } n.h = leafKey kv := [2][]byte{leafKey, leafValue} pairs = append(pairs, kv) case vtMid: if n.l != nil { pairs, err = n.l.computeHashes(currLvl+1, maxLvl, p, pairs) if err != nil { return pairs, err } } else { n.l = &node{ h: p.emptyHash, } } if n.r != nil { pairs, err = n.r.computeHashes(currLvl+1, maxLvl, p, pairs) if err != nil { return pairs, err } } else { n.r = &node{ h: p.emptyHash, } } // once the sub nodes are computed, can compute the current node // hash p.dbg.incHash() k, v, err := newIntermediate(p.hashFunction, n.l.h, n.r.h) if err != nil { return nil, err } n.h = k kv := [2][]byte{k, v} pairs = append(pairs, kv) case vtEmpty: default: return nil, fmt.Errorf("error: n.computeHashes type (%d) no match", t) } return pairs, nil } //nolint:unused func (t *vt) graphviz(w io.Writer) error { fmt.Fprintf(w, `digraph hierarchy { node [fontname=Monospace,fontsize=10,shape=box] `) if _, err := t.root.graphviz(w, t.params, 0); err != nil { return err } fmt.Fprintf(w, "}\n") return nil } //nolint:unused func (n *node) graphviz(w io.Writer, p *params, nEmpties int) (int, error) { if n == nil { return nEmpties, nil } t := n.typ() switch t { case vtLeaf: leafKey, _, err := newLeafValue(p.hashFunction, n.k, n.v) if err != nil { return nEmpties, err } fmt.Fprintf(w, "\"%p\" [style=filled,label=\"%v\"];\n", n, hex.EncodeToString(leafKey[:nChars])) k := n.k v := n.v if len(n.k) >= nChars { k = n.k[:nChars] } if len(n.v) >= nChars { v = n.v[:nChars] } fmt.Fprintf(w, "\"%p\" -> {\"k:%v\\nv:%v\"}\n", n, hex.EncodeToString(k), hex.EncodeToString(v)) fmt.Fprintf(w, "\"k:%v\\nv:%v\" [style=dashed]\n", hex.EncodeToString(k), hex.EncodeToString(v)) case vtMid: fmt.Fprintf(w, "\"%p\" [label=\"\"];\n", n) lStr := fmt.Sprintf("%p", n.l) rStr := fmt.Sprintf("%p", n.r) eStr := "" if n.l == nil { lStr = fmt.Sprintf("empty%v", nEmpties) eStr += fmt.Sprintf("\"%v\" [style=dashed,label=0];\n", lStr) nEmpties++ } if n.r == nil { rStr = fmt.Sprintf("empty%v", nEmpties) eStr += fmt.Sprintf("\"%v\" [style=dashed,label=0];\n", rStr) nEmpties++ } fmt.Fprintf(w, "\"%p\" -> {\"%v\" \"%v\"}\n", n, lStr, rStr) fmt.Fprint(w, eStr) nEmpties, err := n.l.graphviz(w, p, nEmpties) if err != nil { return nEmpties, err } nEmpties, err = n.r.graphviz(w, p, nEmpties) if err != nil { return nEmpties, err } case vtEmpty: default: return nEmpties, fmt.Errorf("ERR") } return nEmpties, nil } //nolint:unused func (t *vt) printGraphviz() error { w := bytes.NewBufferString("") fmt.Fprintf(w, "--------\nGraphviz:\n") err := t.graphviz(w) if err != nil { fmt.Println(w) return err } fmt.Fprintf(w, "End of Graphviz --------\n") fmt.Println(w) return nil }