$\widetilde{F}_{io}(\cdot)$: low-degree multivariate polynomial over $\mathbb{F}$ in $s$ variables.
Verifier can check if $\sum_{x \in\{0,1\}^s}\widetilde{F}_{io}(x)=0$ using the Sum-check protocol.
So, for this, V will need to check that $\widetilde{F}_{io}$ vanishes over the boolean hypercube ($\widetilde{F}_{io}(x)=0 ~\forall x \in\{0,1\}^s$).
But: $\sum_{x\in\{0,1\}^s}\widetilde{F}_{io}(x)=0\centernot\Longleftrightarrow F_{io}(x)=0\forall x \in\{0,1\}^s$.
Recall that $\widetilde{F}_{io}(\cdot)$ is a low-degree multivariate polynomial over $\mathbb{F}$ in $s$ variables.
Thus, checking that $\widetilde{F}_{io}$ vanishes over the boolean hypercube is equivalent to checking that $\widetilde{F}_io=0$.
Thus, V can check $\sum_{x \in\{0,1\}^s}\widetilde{F}_{io}(x)=0$ using the Sum-check protocol (through SZ lemma, V can check if for a random value it equals to 0, and be convinced that applies to all the points whp.).
But: as $\widetilde{F}_{io}(x)$ is not multilinear, so $\sum_{x\in\{0,1\}^s}\widetilde{F}_{io}(x)=0\centernot\Longleftrightarrow F_{io}(x)=0 ~\forall x \in\{0,1\}^s$.
Bcs: the $2^s$ terms in the sum might cancel each other even when the individual terms are not zero.
Solution: combine $\widetilde{F}_{io}(x)$ with $\widetilde{eq}(t, x)$ to get $Q_{io}(t, x)$ as a zero-polynomial
Solution: combine $\widetilde{F}_{io}(x)$ with $\widetilde{eq}(t, x)$ to get $Q_{io}(t, x)$which will be the unique multilinear polynomial, and then check that it is a zero-polynomial
where $\widetilde{eq}(t, x)=\prod_{i=1}^s (t_i \cdot x_i +(1- t_i)\cdot(1- x_i))$, which is the MLE of $eq(x,e)=\{1 ~\text{if}~ x=e,~ 0 ~\text{otherwise}\}$.
Basically $Q_{io}(\cdot)$ is a multivariate polynomial such that
Basically $Q_{io}(\cdot)$ is a multivariate (the unique multilinear) polynomial such that
$$Q_{io}(t)=\widetilde{F}_{io}(t) ~\forall t \in\{0,1\}^s$$
thus, $Q_{io}(\cdot)$ is a zero-polynomial iff $\widetilde{F}_{io}(x)=0 ~\forall x\in\{0,1\}^s$.
$\Longleftrightarrow$ iff $\widetilde{F}_{io}(\cdot)$ encodes a witness $w$ such that $Sat_{R1CS}(x, w)=1$.
To check that $Q_{io}(\cdot)$ is a zero-polynomial: check $Q_{io}(\tau)=0,~ \tau\in^R \mathbb{F}^s$ (Schwartz-Zippel-DeMillo–Lipton lemma).
$\widetilde{F}_{io}(x)$ has degree 2 in each variable, and $\widetilde{eq}(t, x)$ has degree 1 in each variable, so $Q_{io}(t)$ has degree 3 in each variable.
To check that $Q_{io}(\cdot)$ is a zero-polynomial: check $Q_{io}(\tau)=0,~ \tau\in^R \mathbb{F}^s$ (Schwartz-Zippel-DeMillo–Lipton lemma) through the sum-check protocol.
This would mean that the R1CS instance is satisfied.
@ -242,6 +257,8 @@ Instead of evaluating $\widetilde{Z}(r_y)$ in $O(|w|)$ communications, P sends a
Section 6 of the paper, describes how in step 16, instead of evaluating $\widetilde{A},~\widetilde{B},~\widetilde{C}$ at $r_x,~r_y$ with $O(n)$ costs, P commits to $\widetilde{A},~\widetilde{B},~\widetilde{C}$ and later provides proofs of openings.
In a practical implementation those commits to $\widetilde{A},~\widetilde{B},~\widetilde{C}$ could be done in a preprocessing step.