Migrate kv db to go.vocdoni.io/dvote/db interface
Case tree empty, AddBatch was 10.95x times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1, dbPut: 2.049k)
Case tree not empty w/ few leafs, AddBatch was 7.28x times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 198, dbPut: 2.049k)
Case tree not empty w/ enough leafs, AddBatch was 5.94x times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1.000k, dbPut: 2.049k)
Case tree not empty, AddBatch was 9.27x times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 8.191k, dbGet: 1.800k, dbPut: 8.193k)
Case tree not empty & unbalanced, AddBatch was 10.67x times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 10.409k, dbGet: 2.668k, dbPut: 10.861k)
TestAddBatchBench: nCPU: 4, nLeafs: 50000, hash: Blake2b, db: badgerdb
Add loop: 10.10829114s
AddBatch: 732.030263ms
dbgStats(hash: 122.518k, dbGet: 1, dbPut: 122.520k)
TestDbgStats
add in loop in emptyTree dbgStats(hash: 141.721k, dbGet: 134.596k, dbPut: 161.721k)
addbatch caseEmptyTree dbgStats(hash: 24.402k, dbGet: 1, dbPut: 24.404k)
addbatch caseNotEmptyTree dbgStats(hash: 26.868k, dbGet: 2.468k, dbPut: 26.872k)
3 years ago AddBatch implement using VirtualTree.AddBatch
Reduces the num of hashes, dbGet and dbPut on cases D & E.
Current benchmarks:
```
CASE A, AddBatch was 9.101855 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1, dbPut: 2.049k)
CASE B, AddBatch was 8.244078 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 198, dbPut: 2.049k)
CASE C, AddBatch was 8.511131 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 202, dbPut: 2.049k)
CASE D, AddBatch was 8.565696 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 8.191k, dbGet: 1.800k, dbPut: 8.193k)
CASE E, AddBatch was 8.970056 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 10.409k, dbGet: 2.668k, dbPut: 10.861k)
TestAddBatchBench: nCPU: 4, nLeafs: 50000, hash: Blake2b, db: leveldb
Add loop: 10.616145533s
dbgStats(hash: 824.884k, dbGet: 788.975k, dbPut: 924.884k)
AddBatch: 942.34815ms
dbgStats(hash: 122.051k, dbGet: 1, dbPut: 122.053k)
TestDbgStats
add in loop dbgStats(hash: 141.911k, dbGet: 134.650k, dbPut: 161.911k)
addbatch caseA dbgStats(hash: 24.522k, dbGet: 1, dbPut: 24.524k)
addbatch caseD dbgStats(hash: 26.985k, dbGet: 2.465k, dbPut: 26.989k)
```
3 years ago AddBatch implement using VirtualTree.AddBatch
Reduces the num of hashes, dbGet and dbPut on cases D & E.
Current benchmarks:
```
CASE A, AddBatch was 9.101855 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1, dbPut: 2.049k)
CASE B, AddBatch was 8.244078 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 198, dbPut: 2.049k)
CASE C, AddBatch was 8.511131 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 202, dbPut: 2.049k)
CASE D, AddBatch was 8.565696 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 8.191k, dbGet: 1.800k, dbPut: 8.193k)
CASE E, AddBatch was 8.970056 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 10.409k, dbGet: 2.668k, dbPut: 10.861k)
TestAddBatchBench: nCPU: 4, nLeafs: 50000, hash: Blake2b, db: leveldb
Add loop: 10.616145533s
dbgStats(hash: 824.884k, dbGet: 788.975k, dbPut: 924.884k)
AddBatch: 942.34815ms
dbgStats(hash: 122.051k, dbGet: 1, dbPut: 122.053k)
TestDbgStats
add in loop dbgStats(hash: 141.911k, dbGet: 134.650k, dbPut: 161.911k)
addbatch caseA dbgStats(hash: 24.522k, dbGet: 1, dbPut: 24.524k)
addbatch caseD dbgStats(hash: 26.985k, dbGet: 2.465k, dbPut: 26.989k)
```
3 years ago AddBatch implement using VirtualTree.AddBatch
Reduces the num of hashes, dbGet and dbPut on cases D & E.
Current benchmarks:
```
CASE A, AddBatch was 9.101855 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1, dbPut: 2.049k)
CASE B, AddBatch was 8.244078 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 198, dbPut: 2.049k)
CASE C, AddBatch was 8.511131 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 202, dbPut: 2.049k)
CASE D, AddBatch was 8.565696 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 8.191k, dbGet: 1.800k, dbPut: 8.193k)
CASE E, AddBatch was 8.970056 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 10.409k, dbGet: 2.668k, dbPut: 10.861k)
TestAddBatchBench: nCPU: 4, nLeafs: 50000, hash: Blake2b, db: leveldb
Add loop: 10.616145533s
dbgStats(hash: 824.884k, dbGet: 788.975k, dbPut: 924.884k)
AddBatch: 942.34815ms
dbgStats(hash: 122.051k, dbGet: 1, dbPut: 122.053k)
TestDbgStats
add in loop dbgStats(hash: 141.911k, dbGet: 134.650k, dbPut: 161.911k)
addbatch caseA dbgStats(hash: 24.522k, dbGet: 1, dbPut: 24.524k)
addbatch caseD dbgStats(hash: 26.985k, dbGet: 2.465k, dbPut: 26.989k)
```
3 years ago AddBatch implement using VirtualTree.AddBatch
Reduces the num of hashes, dbGet and dbPut on cases D & E.
Current benchmarks:
```
CASE A, AddBatch was 9.101855 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 1, dbPut: 2.049k)
CASE B, AddBatch was 8.244078 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 198, dbPut: 2.049k)
CASE C, AddBatch was 8.511131 times faster than without AddBatch
nCPU: 4, nLeafs: 1024, hash: Poseidon, db: memory
dbgStats(hash: 2.047k, dbGet: 202, dbPut: 2.049k)
CASE D, AddBatch was 8.565696 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 8.191k, dbGet: 1.800k, dbPut: 8.193k)
CASE E, AddBatch was 8.970056 times faster than without AddBatch
nCPU: 4, nLeafs: 4096, hash: Poseidon, db: memory
dbgStats(hash: 10.409k, dbGet: 2.668k, dbPut: 10.861k)
TestAddBatchBench: nCPU: 4, nLeafs: 50000, hash: Blake2b, db: leveldb
Add loop: 10.616145533s
dbgStats(hash: 824.884k, dbGet: 788.975k, dbPut: 924.884k)
AddBatch: 942.34815ms
dbgStats(hash: 122.051k, dbGet: 1, dbPut: 122.053k)
TestDbgStats
add in loop dbgStats(hash: 141.911k, dbGet: 134.650k, dbPut: 161.911k)
addbatch caseA dbgStats(hash: 24.522k, dbGet: 1, dbPut: 24.524k)
addbatch caseD dbgStats(hash: 26.985k, dbGet: 2.465k, dbPut: 26.989k)
```
3 years ago |
|
package arbo
import ( "encoding/hex" "math" "math/big" "testing"
qt "github.com/frankban/quicktest" "go.vocdoni.io/dvote/db" "go.vocdoni.io/dvote/db/badgerdb" )
// testVirtualTree adds the given key-values and tests the vt root against the
// Tree
func testVirtualTree(c *qt.C, maxLevels int, keys, values [][]byte) { c.Assert(len(keys), qt.Equals, len(values))
// normal tree, to have an expected root value
database, err := badgerdb.New(db.Options{Path: c.TempDir()}) c.Assert(err, qt.IsNil) tree, err := NewTree(Config{Database: database, MaxLevels: maxLevels, HashFunction: HashFunctionSha256}) c.Assert(err, qt.IsNil) for i := 0; i < len(keys); i++ { err := tree.Add(keys[i], values[i]) c.Assert(err, qt.IsNil) }
// virtual tree
vTree := newVT(maxLevels, HashFunctionSha256)
c.Assert(vTree.root, qt.IsNil)
for i := 0; i < len(keys); i++ { err := vTree.add(0, keys[i], values[i]) c.Assert(err, qt.IsNil) }
// compute hashes, and check Root
_, err = vTree.computeHashes() c.Assert(err, qt.IsNil) root, err := tree.Root() c.Assert(err, qt.IsNil) c.Assert(vTree.root.h, qt.DeepEquals, root) }
func TestVirtualTreeTestVectors(t *testing.T) { c := qt.New(t)
maxLevels := 32 keyLen := int(math.Ceil(float64(maxLevels) / float64(8))) //nolint:gomnd
keys := [][]byte{ BigIntToBytes(keyLen, big.NewInt(1)), BigIntToBytes(keyLen, big.NewInt(33)), BigIntToBytes(keyLen, big.NewInt(1234)), BigIntToBytes(keyLen, big.NewInt(123456789)), } values := [][]byte{ BigIntToBytes(keyLen, big.NewInt(2)), BigIntToBytes(keyLen, big.NewInt(44)), BigIntToBytes(keyLen, big.NewInt(9876)), BigIntToBytes(keyLen, big.NewInt(987654321)), }
// check the root for different batches of leafs
testVirtualTree(c, maxLevels, keys[:1], values[:1]) testVirtualTree(c, maxLevels, keys[:2], values[:2]) testVirtualTree(c, maxLevels, keys[:3], values[:3]) testVirtualTree(c, maxLevels, keys[:4], values[:4])
// test with hardcoded values
testvectorKeys := []string{ "1c7c2265e368314ca58ed2e1f33a326f1220e234a566d55c3605439dbe411642", "2c9f0a578afff5bfa4e0992a43066460faaab9e8e500db0b16647c701cdb16bf", "9cb87ec67e875c61390edcd1ab517f443591047709a4d4e45b0f9ed980857b8e", "9b4e9e92e974a589f426ceeb4cb291dc24893513fecf8e8460992dcf52621d4d", "1c45cb31f2fa39ec7b9ebf0fad40e0b8296016b5ce8844ae06ff77226379d9a5", "d8af98bbbb585129798ae54d5eabbc9d0561d583faf1663b3a3724d15bda4ec7", "3cd55dbfb8f975f20a0925dfbdabe79fa2d51dd0268afbb8ba6b01de9dfcdd3c", "5d0a9d6d9f197c091bf054fac9cb60e11ec723d6610ed8578e617b4d46cb43d5", } keys = [][]byte{} values = [][]byte{} for i := 0; i < len(testvectorKeys); i++ { key, err := hex.DecodeString(testvectorKeys[i]) c.Assert(err, qt.IsNil) keys = append(keys, key) values = append(values, []byte{0}) }
// check the root for different batches of leafs
testVirtualTree(c, 256, keys[:1], values[:1]) testVirtualTree(c, 256, keys, values) }
func TestVirtualTreeRandomKeys(t *testing.T) { c := qt.New(t)
// test with random values
nLeafs := 1024 keys := make([][]byte, nLeafs) values := make([][]byte, nLeafs) for i := 0; i < nLeafs; i++ { keys[i] = randomBytes(32) values[i] = randomBytes(32) }
testVirtualTree(c, 256, keys, values) }
func TestVirtualTreeAddBatch(t *testing.T) { c := qt.New(t)
nLeafs := 2000 maxLevels := 256
keys := make([][]byte, nLeafs) values := make([][]byte, nLeafs) for i := 0; i < nLeafs; i++ { keys[i] = randomBytes(32) values[i] = randomBytes(32) }
// normal tree, to have an expected root value
database, err := badgerdb.New(db.Options{Path: c.TempDir()}) c.Assert(err, qt.IsNil) tree, err := NewTree(Config{Database: database, MaxLevels: maxLevels, HashFunction: HashFunctionBlake2b}) c.Assert(err, qt.IsNil) for i := 0; i < len(keys); i++ { err := tree.Add(keys[i], values[i]) c.Assert(err, qt.IsNil) }
// virtual tree
vTree := newVT(maxLevels, HashFunctionBlake2b)
c.Assert(vTree.root, qt.IsNil)
invalids, err := vTree.addBatch(keys, values) c.Assert(err, qt.IsNil) c.Assert(len(invalids), qt.Equals, 0)
// compute hashes, and check Root
_, err = vTree.computeHashes() c.Assert(err, qt.IsNil) root, err := tree.Root() c.Assert(err, qt.IsNil) c.Assert(vTree.root.h, qt.DeepEquals, root) }
func TestVirtualTreeAddBatchFullyUsed(t *testing.T) { c := qt.New(t)
vTree1 := newVT(7, HashFunctionPoseidon) // used for add one by one
vTree2 := newVT(7, HashFunctionPoseidon) // used for addBatch
var keys, values [][]byte for i := 0; i < 128; i++ { k := BigIntToBytes(1, big.NewInt(int64(i))) v := k
keys = append(keys, k) values = append(values, v)
// add one by one expecting no error
err := vTree1.add(0, k, v) c.Assert(err, qt.IsNil) }
invalids, err := vTree2.addBatch(keys, values) c.Assert(err, qt.IsNil) c.Assert(0, qt.Equals, len(invalids)) }
func TestGetNodesAtLevel(t *testing.T) { c := qt.New(t)
tree0 := vt{ params: ¶ms{ maxLevels: 100, hashFunction: HashFunctionBlake2b, emptyHash: make([]byte, HashFunctionBlake2b.Len()), }, root: nil, }
tree1 := vt{ params: ¶ms{ maxLevels: 100, hashFunction: HashFunctionBlake2b, emptyHash: make([]byte, HashFunctionBlake2b.Len()), }, root: &node{ l: &node{ l: &node{ k: []byte{0, 0, 0, 0}, v: []byte{0, 0, 0, 0}, }, r: &node{ k: []byte{0, 0, 0, 1}, v: []byte{0, 0, 0, 1}, }, }, r: &node{ l: &node{ k: []byte{0, 0, 0, 2}, v: []byte{0, 0, 0, 2}, }, r: &node{ k: []byte{0, 0, 0, 3}, v: []byte{0, 0, 0, 3}, }, }, }, } // tree1.printGraphviz()
tree2 := vt{ params: ¶ms{ maxLevels: 100, hashFunction: HashFunctionBlake2b, emptyHash: make([]byte, HashFunctionBlake2b.Len()), }, root: &node{ l: nil, r: &node{ l: &node{ l: &node{ l: &node{ k: []byte{0, 0, 0, 0}, v: []byte{0, 0, 0, 0}, }, r: &node{ k: []byte{0, 0, 0, 1}, v: []byte{0, 0, 0, 1}, }, }, r: &node{ k: []byte{0, 0, 0, 2}, v: []byte{0, 0, 0, 2}, }, }, r: &node{ k: []byte{0, 0, 0, 3}, v: []byte{0, 0, 0, 3}, }, }, }, } // tree2.printGraphviz()
tree3 := vt{ params: ¶ms{ maxLevels: 100, hashFunction: HashFunctionBlake2b, emptyHash: make([]byte, HashFunctionBlake2b.Len()), }, root: &node{ l: nil, r: &node{ l: &node{ l: &node{ l: &node{ k: []byte{0, 0, 0, 0}, v: []byte{0, 0, 0, 0}, }, r: &node{ k: []byte{0, 0, 0, 1}, v: []byte{0, 0, 0, 1}, }, }, r: &node{ k: []byte{0, 0, 0, 2}, v: []byte{0, 0, 0, 2}, }, }, r: nil, }, }, } // tree3.printGraphviz()
nodes0, err := tree0.getNodesAtLevel(2) c.Assert(err, qt.IsNil) c.Assert(len(nodes0), qt.DeepEquals, 4) c.Assert("0000", qt.DeepEquals, getNotNils(nodes0))
nodes1, err := tree1.getNodesAtLevel(2) c.Assert(err, qt.IsNil) c.Assert(len(nodes1), qt.DeepEquals, 4) c.Assert("1111", qt.DeepEquals, getNotNils(nodes1))
nodes1, err = tree1.getNodesAtLevel(3) c.Assert(err, qt.IsNil) c.Assert(len(nodes1), qt.DeepEquals, 8) c.Assert("00000000", qt.DeepEquals, getNotNils(nodes1))
nodes2, err := tree2.getNodesAtLevel(2) c.Assert(err, qt.IsNil) c.Assert(len(nodes2), qt.DeepEquals, 4) c.Assert("0011", qt.DeepEquals, getNotNils(nodes2))
nodes2, err = tree2.getNodesAtLevel(3) c.Assert(err, qt.IsNil) c.Assert(len(nodes2), qt.DeepEquals, 8) c.Assert("00001100", qt.DeepEquals, getNotNils(nodes2))
nodes3, err := tree3.getNodesAtLevel(2) c.Assert(err, qt.IsNil) c.Assert(len(nodes3), qt.DeepEquals, 4) c.Assert("0010", qt.DeepEquals, getNotNils(nodes3))
nodes3, err = tree3.getNodesAtLevel(3) c.Assert(err, qt.IsNil) c.Assert(len(nodes3), qt.DeepEquals, 8) c.Assert("00001100", qt.DeepEquals, getNotNils(nodes3))
nodes3, err = tree3.getNodesAtLevel(4) c.Assert(err, qt.IsNil) c.Assert(len(nodes3), qt.DeepEquals, 16) c.Assert("0000000011000000", qt.DeepEquals, getNotNils(nodes3)) }
func getNotNils(nodes []*node) string { s := "" for i := 0; i < len(nodes); i++ { if nodes[i] == nil { s += "0" } else { s += "1" } } return s }
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